Since this is a CTF, I won't give quite a full solution, just try to unstuck the OP (who seemingly made significant progress).
We are given $e$ and $d$. They must match $e\,d\equiv1\pmod{\operatorname{lcm}(p-1,q-1)}$, but because the bit size of $d$ is just one bit below the sum of the bit sizes of $p$ and $q$, and because that's a common way to compute $d$, and also we can test that $e\,d\equiv1\pmod 4$, it's a reasonable betthat $d=e^{-1}\bmod((p-1)(q-1))$, and I'll assume that unless it's proven otherwise.
It follows that $e\,d-1=k\,(p-1)(q-1)$ for some integer $k$. Since $p$ and $q$ are large primes, they are odd, and we get the integer equation
$$\frac{ed-1}4=k\,u\,v\quad\mathsf{with}\quad u=\frac{p-1}2\quad \mathsf{and}\quad v=\frac{q-1}2$$
The question already lists the factors of $e\,d-1$, from which we extract the $12$ factors of $k\,u\,v$ :
13 17 17 137 263 397 11119 12203 99181 12330780871 94976914459050383474573 663887747473781762461237
We need to split these factors into the integers $k$, $u$ and $v$. Their respective base-2 logarithm, rounding to two decimals towards nearest, are the 12 values
3.70 4.09 4.09 7.10 8.04 8.63 13.44 13.57 16.60 33.52 76.33 79.14
So we have reduced the problem to picking among this list two groups that each sums to $126.5\pm0.5$; and further such that the products $u$ and $v$ of the corresponding integers in the first list are such that $p=2u+1$ and $q=2v+1$ are prime.
There are only $3^{12}$ ways to split $12$ integers into $3$ groups, and it's easy to prune this tree because we approximately know the sums ($126.5\pm0.5$ for the groups for $u$ and $v$, from which we deduce $15.246\pm1.001$ for the group for $k$). E.g. one of the two largest values must belong to $u$ and the other to $v$, and then the third largest must belong to one of these.
That hopefully yields $p$ and $q$, and then deciphering a message should be easy.