Join Log in
Score:1
EMG avatar Ubuntu

Problem installing tidyverse: with a Warning in install.packages:installation of package ‘tidyverse’ had non-zero exit status

in flag
EMG 
/usr/bin/ld: cannot find -llapack
/usr/bin/ld: cannot find -lblas
collect2: error: ld returned 1 exit status
/usr/share/R/share/make/shlib.mk:10: recipe for target 'Matrix.so' failed
make: *** [Matrix.so] Error 1
ERROR: compilation failed for package ‘Matrix’
* removing ‘/home/ephrem/R/i686-pc-linux-gnu-library/4.1/Matrix’
Warning in install.packages :
  installation of package ‘Matrix’ had non-zero exit status
ERROR: dependency ‘Matrix’ is not available for package ‘mgcv’
* removing ‘/home/ephrem/R/i686-pc-linux-gnu-library/4.1/mgcv’
Warning in install.packages :
  installation of package ‘mgcv’ had non-zero exit status
ERROR: dependency ‘mgcv’ is not available for package ‘ggplot2’
* removing ‘/home/ephrem/R/i686-pc-linux-gnu-library/4.1/ggplot2’
Warning in install.packages :
  installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependency ‘ggplot2’ is not available for package ‘tidyverse’
* removing ‘/home/ephrem/R/i686-pc-linux-gnu-library/4.1/tidyverse’
Warning in install.packages :
  installation of package ‘tidyverse’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/Rtmp85JnYq/downloaded_packages’
Warning in install.packages :
  converting NULL pointer to R NULL

I’m working on Ubuntu 18 (if it helps) Architecture: i686 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian

> sessionInfo() 
R version 4.1.1 (2021-08-10) 
Platform: i686-pc-linux-gnu (32-bit) 
Running under: Ubuntu 18.04.6 LTS 
Matrix products: default 
BLAS: /usr/lib/i386-linux-gnu/atlas/libblas.so.3.10.3 
LAPACK: /usr/lib/i386-linux-gnu/atlas/liblapack.so.3.10.3

Out put of apt-cache policy r-base-dev:

r-base-dev:
  Installed: (none)
  Candidate: 4.1.1-1.2004.0
  Version table:
     4.1.1-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.1.1-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.1.0-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.1.0-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.0.5-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.0.5-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.0.4-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.0.4-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.0.3-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.0.3-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.0.2-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.0.2-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.0.1-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.0.1-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     4.0.0-1.2004.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages
     4.0.0-1.1804.0 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/ Packages
     3.6.3-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.6.2-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.6.1-3bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.6.1-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.6.0-2bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.6.0-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.5.3-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.5.2-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.5.1-2bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.5.1-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.5.0-1bionic 500
        500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages
     3.4.4-1ubuntu1 500
        500 http://us.archive.ubuntu.com/ubuntu bionic/universe i386 Packages
     3.0.2-1ubuntu1.1~esm2 -32768
       -32768 https://esm.ubuntu.com/ubuntu trusty-infra-security/main i386 Packages
668
0 + 0
David avatar
cn flag
David
Did you put them in tmp or is that your default location for downloads? You may want to look at this web site. https://www.fosslinux.com/41739/linux-tmp-directory-everything-you-need-to-know.htm#:~:text=The%20%2Ftmp%20directory%20in%20Linux,applications%20running%20on%20the%20machine.&text=After%20you%20have%20saved%20it,once%20you%20exit%20the%20document.
1
Reply
N0rbert avatar
zw flag
N0rbert
How did you installed R 4.1 on 18.04 LTS? Did you follow https://cran.r-project.org/bin/linux/ubuntu/ ? Please add output of `apt-cache policy r-base-dev` to the question by editing it.
0
Reply
Score:0
N0rbert avatar Ubuntu
zw flag
N0rbert

Usually R-packages installation require their compilation, so special dedicated r-base-dev package is needed, install it with:

sudo apt-get update
sudo apt-get install r-base-dev

Also you can see that errors are self-explanatory, the relevant development libraries for blas and lapack are missed. To install them and other needed packages use commands below:

sudo apt-get install liblapack-dev libblas-dev libssl-dev libcurl4-openssl-dev libxml2-dev

And then retry by running

R -e install.packages('tidyverse')
0 + 0
EMG avatar
in flag
EMG
I didn't specify any download location. I think it must be the default location wher RStudio downloads. My command was: install.packages("tidyverse")
0
Reply
EMG avatar
in flag
EMG
Already did those too....and managed to remove some issues. But the unavailable Matrix and mgcv still persist. I have been at it for more than a day!
0
Reply
EMG avatar
in flag
EMG
y the way, I’m working on Ubuntu 18 (if it helps) Architecture: i686 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian
0
Reply
EMG avatar
in flag
EMG
> sessionInfo() R version 4.1.1 (2021-08-10) Platform: i686-pc-linux-gnu (32-bit) Running under: Ubuntu 18.04.6 LTS Matrix products: default BLAS: /usr/lib/i386-linux-gnu/atlas/libblas.so.3.10.3 LAPACK: /usr/lib/i386-linux-gnu/atlas/liblapack.so.3.10.3
0
Reply
N0rbert avatar
zw flag
N0rbert
Understood, I'll retry on 32-bit system later, and update answer soon.
0
Reply
EMG avatar
in flag
EMG
Thank you so much David...it worked!!! I will post your solution!
0
Reply
N0rbert avatar
zw flag
N0rbert
Great, so you can accept my answer. Your answer is more like an comment, I would recommend to remove it.
0
Reply
ธงชาติไทย
Elon Musk
I sit in a Tesla and translated this thread with Ai:

mangohost

Post an answer

Most people don’t grasp that asking a lot of questions unlocks learning and improves interpersonal bonding. In Alison’s studies, for example, though people could accurately recall how many questions had been asked in their conversations, they didn’t intuit the link between questions and liking. Across four studies, in which participants were engaged in conversations themselves or read transcripts of others’ conversations, people tended not to realize that question asking would influence—or had influenced—the level of amity between the conversationalists.