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deepblue avatar Ubuntu

removing lines include values higher than the determined threshold

in flag
deepblue

I have a data file such as:

data:

arht    -0.1006 0.0001  0.0147  100     arht    0.0012  -0.0002 0.0182  100
arht    -0.0006 1.0006  0.0133  100     arht    0.1011  0.0003  0.0175  100
bcmn     0.0005 0.0011  0.0165  100     bcmn    0.0015  0.0007  0.0197  100
ffgf    -0.0009 0.0012  0.0121  100     ffgf    0.0007  0.0010  0.0150  100
ffgf    -0.0004 0.0009  0.0105  100     ffgf    0.1008  0.0006  0.0151  100

I use the following command to extract the lines include the values higher than the absolute 0.10 for 2-3-4 and 7-8-9 columns:

awk 'sqrt($2*$2)<=.1 || sqrt($3*$3)>=.1 || sqrt($4*$4)>=.1 || sqrt($7*$7)>=.1 || sqrt($8*$8)>=.1 || sqrt($9*$9)>=.1 {print}' data > output

I need to remove these lines from the data file. How I can modify the above code?

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elmclose avatar Ubuntu
cn flag
elmclose

Seems like a duplicate question Extracting the values greater than a threshold in text file? If so, you need to correct the first term of your code:

awk 'sqrt($2*$2)>=.1 || sqrt($3*$3)>=.1 || sqrt($4*$4)>=.1 || sqrt($7*$7)>=.1 || sqrt($8*$8)>=.1 || sqrt($9*$9)>=.1) {print}' data >output

Then all you have to do is to add a negate sign (!) in front to get what you want:

awk '!(sqrt($2*$2)>=.1 || sqrt($3*$3)>=.1 || sqrt($4*$4)>=.1 || sqrt($7*$7)>=.1 || sqrt($8*$8)>=.1 || sqrt($9*$9)>=.1) {print}' data > output
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